Grid Asia 2007

International Collaboration Track DETAILS

Session: Grids Around Asia

"The APAC Grid Program - Building a National Grid for Australia"
Speaker: A/Prof. Andrew Rohl (iVec, Australia)

Abstract
The Australian Partnership for Advanced Computing (APAC) Grid Program has developed Globus 2 and 4 based Grid infrastructures that simplify access to the available computing resources by Australian researchers. Using Xen virtual machines, multiple interfaces to the available resources at the national and state computing facilities have been successfully implemented. In this talk, I will detail how this was achieved as well as providing an overview of how some of the early adopter communities are using the APAC Grid.

Biodata

Professor Rohl is a world recognized leader in the field of computer simulation of surfaces. He has focused on the simulation of surface interactions in growing crystals but the methods and programs that he has developed are directly relevant to many areas of materials science and nanotechnology. He has been involved in the development of two leading computer simulation packages for materials science called MARVIN and GULP, both of which are used in hundreds of laboratories worldwide. He is the author of over 90 refereed papers and has attracted millions of dollars of research funding. In 2004, he became the CEO of iVEC, 'The hub of advanced computing in Western Australia' This unincorporated joint venture involves three Universities, a vocational educational and training (VET) provider and the Commonwealth Scientific and Industrial Research Organisation (CSIRO) and provides access to advanced computing, large-scale storage, high-speed communications and scientific visualisation. iVEC has enthusiastically embraced grid technologies and is a very active partner in the development of the APAC National Grid.

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"ASEAN Science & Technology Research & Education Network Alliance"

Speaker: Dr. Saiful Husain (Universiti Brunei Darussalam, Brunei)

Abstract
ASEAN Science and Technology Research and Education Network Alliance (ASTRENA) has been considered to be very active in playing its role in promoting integration and activities in ASEAN research and education, and to create the framework to facilitate accelerated cooperation and collaboration on a bilateral or multilateral basis, and to position ASEAN competitively in linkages and exchanges with other regional networks such as APAN, North Asian networks, networks in South Asia, and beyond (including Europe and North America), through participation of ASTRENA in various workshops, meetings and forum. This talk will focus on the overview and insight of the collaboration strategies of ASTRENA and the projects and applications that currently been undertaken.

Biodata

Dr Saiful Azmi Husain is the Chairman of the ASEAN Science and Technology Research and Education Network Alliance (ASTRENA), a project of the ASEAN sectoral Committee on Science and Technology (COST). He is currently Dean of Student Affairs and Lecturer, Department of Mathematics, Faculty of Science, Universiti Brunei Darussalam. He obtained his BSc Ed from Brunei, MSc from University of East Anglia, and his PhD from the Australian National University. His current research mainly focuses on modelling, analysing and simulating the visco-elastic materials, such as food dough, household plastics, glasses, bone and muscles. He is a visiting scientist at the Commonwealth Scientific and Industrial Research Organisation (CSIRO) and the Australian National University (ANU), Canberra, Australia.

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"ChinaGrid: National Education and Research Cyber-infrastructure in China"

Speaker: Prof. Hai Jin (Huazhong Science & Technology University, China)

Abstract
I will summarize the first phase of ChinaGrid project, which is the largest national grid project in China, from its basic infrastructure, grid middleware package development and deployment, to the typical grid application support environment. I will also introduce the plan for ChinaGrid phase 2.

Biodata

Hai Jin is a Professor of Computer Science and Engineering at the Huazhong University of Science and Technology (HUST) in China. He is also the Dean of School of Computer Science and Technology at HUST. He received his PhD in computer engineering from HUST in 1994. In 1996, he was awarded German Academic Exchange Service (DAAD) fellowship for visiting the Technical University of Chemnitz in Germany. He worked for the University of Hong Kong in 1998 - 2000 and participated in the HKU Cluster project. He worked as a visiting scholar at the University of Southern California in 1999 - 2000. He is the chief scientist of the largest grid computing project, ChinaGrid, in China. Dr. Jin is a senior member of IEEE and member of ACM. He is the member of Grid Forum Steering Group (GFSG). His research interests include cluster computing and grid computing, peer-to-peer computing, network storage, network security, and high assurance computing.

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"Grids in Japan"

Speaker: Satoshi Sekiguchi (Advanced Industrial Science & Technology, Japan)

Biodata

Satoshi Sekiguchi joined Electrotechnical Laboratory, Agency of Industrial Science and Technology in 1984, and is the founding director of Grid Technology Research Center (GTRC), AIST since 2002. He is a member of IEEE, SIAM, IPSJ, and is a chair of the SIGHPC. He has served as a steering committee member of the Global Grid Forum (GGF) till 2003, and now a member of GGF advisory committee. He has been one of technology and community leaders, who is in particular one of the PIs of the Ninf project since 1995, the founder of the Asia Pacific Grid partnership (ApGrid), National Research Grid Initiative (NAREGI), and chairing Japan Grid Consortium (JpGrid).

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"Vision for Building a Cyber-infrastructure in Korea"
Speaker: Dr. Jongsuk Ruth Lee (KISTI, Korea)

Abstract
The Grid is one of promising information and communication technologies which enable us to use simultaneously all kinds of resources such as computers and storages that are connected by high speed networks. This presentation addresses the status and vision for building a cyber-infrastructure in Korea. The national K*Grid project, KoCED Grid project, e-Science project, and others have been executed as a part of an effort to build the cyber-infrastructure in Korea since 2002. Many activities such as to build Grid testbed, to develop Grid middleware, to support and develop Grid applications, and to do an international collaborations for realizing the vision have actively been performed.

Biodata
Dr. Jongsuk Ruth Lee (jsruthlee@kisti.re.kr) is a senior researcher in Grid Computing Research Team, HPcN (High Performance convergence Network) Project Division, KISTI (Korea Institute of Science and Technology Information). She received a Ph.D. in Computer Science from University of Canterbury, New Zealand. She has played a crucial role of especially developing a K*Grid middleware toolkit called "MoreDream" and a K*Grid service package called "KMI-R1 (K*Grid Middleware Initiative - Release 1)" since 2002. She also works for University of Science & Technology, Korea as an associate professor. Her research interests include Grid Computing, Grid middleware, parallel/distributed computing and parallel/distributed simulation, and high performance network.

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"Grid in Malaysia - 1"

Speaker: A/Prof. Suhaimi Napis (Universiti Putra Malaysia, Malaysia)

Biodata

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"Grid @ MIMOS"

Speaker: Luke Jingyuan (MIMOS)

Abstract
This presentation will give a short introduction on MIMOS Grid Computing Lab and its focus areas and how the lab envision the Grid be applied to in the near future.

Biodata

Luke Jingyuan graduated with a BEng in Electrical and Electronics Engineering from University of Science Malaysia in 1995 and joined MIMOS R&D since. He was initially involved in several image processing and robotics research projects before extending his research interests into network multimedia, IP multicasting and finally into High Performance Computing and Grid Computing.

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"Philippine e-Science Grid Program"

Speaker: Rey Vincent Babilonia (Advanced S&T Institute, Philippines)

Abstract
The Philippine e-Science Grid (PSIGrid) aims to enhance research, development and delivery of products and services that require massive computational resources. It is positioned to become the umbrella program for grid computing projects in the Philippines. Bioinformatics and numerical earth modeling have been identified as the most immediate beneficiaries of this program, and are the applications that will have the most significant and visible impact for the program. Among the current stakeholders of this program include Advanced Science and Technology Institute (ASTI), Ateneo de Manila University (ADMU), University of the Philippines (UP), Philippine Atmospheric, Geophysical and Astronomical Services Administration (PAGASA), and Philippine Institute of Volcanology and Seismology (PHIVOLCS). PSIGrid is still being proposed to the Department of Science and Technology (DOST) in order to receive funding, but the stakeholders already have activities and facilities as well as projects that are running on their respective computing facilities.

Biodata
Rey Vincent Babilonia is a science research specialist with the Advanced Science and Technology Institute. He is currently involved in building the Philippine national grid infrastructure. He worked with the PREGINET, the research and education network of the Philippines, wherein he made contributions in digital content systems library management system, network management system and IPv6 research. His research interests include software development, Web development, IPv4 and IPv6 networking, and distributed and parallel computing. Mr. Babilonia took his Bachelor of Science degree in Computer Science at the University of the Philippines in Diliman. He is currently taking up Master in Information Systems at the University of the Philippines Open University.

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"Grids in Taiwan - 1"

Speaker: Dr. Simon Lin (Academic Sinica Grid Center, Taiwan)

Biodata

Simon Lin is Director of Computing Centre, Academia Sinica and the Executive Officer of the Pacific Neighborhood Consortium. He is also the Chair of the General Support Division, which supports the infrastructure operation and maintenance of Taiwan's National Digital Archives Program. Simon Lin received his PhD degree from Edinburgh University in Theoretical Physics. His research interests include Computational Physics and Scientific Computing, Statistical Physics and Field theory, Grid Computing, Metadata and Digital Archives. He is also an adjunct professor in several universities.


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"Grids in Taiwan - 2
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Speaker: Dr. Fang-Pang Lin (NCHC,Taiwan)

Biodata

Fang-Pang Lin is a key developer for developing a national cyber-infrastructure, namely Knowledge Innovation National Grid (KING). He initiated the Ecogrid project within PRAGMA as well as within KING to overarch international collaboration and extended development of KING for the year 2003. His recent major efforts include Grid-based Lake Metabolism research and Telescience in PRAGMA, World Wide Meta-computing with HLRS, Germany and workflow model with AIAI, Edinburgh University. Fang-Pang Lin obtained his PhD in University of Wales at Swansea, UK. He worked in Rolls-Royce University Computing Center in Oxford University as a research scientist after one-year postdoctoral research in Swansea. He joined NCHC in 1997 and has been working in numerical simulation and software engineering regarding application integration.

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"Driving Innovation with a National Grid Infrastructure"

Speaker: Dr. Putchong Uthayopas (Thai National Grid Project, Thailand)

Abstract
One of the key factors to the competitiveness in an information age is a presence of a strong e-infrastructure that allows people to participate, communicate, and share both computing resources and innovative ideas. Since last year, Thai National Grid Center successfully drives the creation of a nation wide Grid infrastructure involving more than 15 geographically distributed institutes in Thailand. This talk presents an overview of the project, progress, technical aspects, and challenges in the building of a national scale grid system. Some of the applications that use ThaiGrid infrastructure will be discussed. Finally, the next important step is to move toward a User Centric Grid, a Grid that offers a rich and powerful set of services that are easy to use.

Biodata

Putchong Uthayopas works at Department of Computer Engineering, Faculty of Engineering, Kasetsart University, Thailand. He is also Director of the Thai National Grid Center, Software Industry promotion Agency (SIPA), Ministry of Information and Communication Technology. His research interests are cluster and Grid computing technology especially in middleware and tools. He is actively involved in many Cluster and Grid Computing activities in Thailand and Asia Pacific. He is the co-founder of Thai National Grid Project. In addition, he is a co-chairman of Grid committee and e-science working groups of APAN. He is also a Thailand's representative in PRAGMA, ApGrid, and ASTRENA project. During summer of 1998, 1999, 2000, and 2001 he was a visiting scholar at Argonne National Laboratory working with MPICH team on cluster computing environment.

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Session: UK-Singapore Partnership in Science Workshop on eScience & Grid Computing

Speaker: Prof. Yike Guo (Imperial College, UK)

Biodata

Dr. Yike Guo is a professor in computing science in the Department of Computing, Imperial College London. His research is in the area of parallel applications and network computing including parallel data mining algorithms, distributed data mining systems, decision support systems and parallel symbolic computation. He is also leading two research and development teams to build an internet based large scale distributed data mining system and a problem solving environment for high performance financial modelling. Yike Guo graduated in Computer Science from Tsinghua University, Beijing, China and has a PhD in Logic and Declarative Programming from Imperial College, University of London. Since his graduation from Imperial College, he has been working on data intensive parallel applications and network computing. Since Sept. 1995, he is the Technical Director of Imperial College/Fujitsu Parallel Computing Research Centre responsible for organising research activities of the center. From Sept. 1997, he is the Technical Director of Imperial College Parallel Computing Centre.

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"The Expo Ontology: Describing Scientific Experiments"
Speaker: Prof. Ross D King (University of Wales, Aberystwyth, UK)

Abstract
The formal description of experiments for efficient analysis, annotation, and sharing of results is a fundamental objective of science. Ontologies, the explicit specification of the concepts in a subject, are required to achieve this goal. A few subject-specific ontologies of experiments currently exist. However, despite the unity of science, there is no generally accepted ontology of scientific experiments. We propose the ontology EXPO to meet this need. EXPO links the general upper ontology SUMO with subject-specific ontologies of experiments by formalising the generic concepts of experimental design, methodology, and results representation. The structure of EXPO follows international standards and formats: with its concepts organised in a (/is-a/) hierarchy, along with their relations and definitions. EXPO is expressed in the W3C standard ontology language OWL. We first demonstrated the utility of EXPO by applying it to two experiments: one in high-energy physics, and the other in molecular biology. The use of EXPO made the goals and structure of these experiments more explicit, revealed ambiguities, and highlighted similarities. More recently we have also demonstrated EXPO's value in describing our own "Robot Scientist" experiments. We are currently extending EXPO for application to drug screening and design, and working with the Royal Society of Chemistry to use EXPO to help annotate chemistry publications. We argue that the use of ontologies to annotate scientific experiments will have profound effects on scientific publications. We conclude that EXPO is of general value in describing experiments and a step towards the formalisation of science.

Biodata

Professor Ross D. King has an international reputation in bioinformatics, chemo-informatics and machine learning based on more than 20 years experience in these fields. His first degree was in Microbiology from the University of Aberdeen, he then did an MSc in computer science from the University of Newcastle-upon-Tyne. His PhD degree from the Turing Institute was perhaps the first bioinformatics Ph.D. in the UK. He has more than 100 refereed publications in computer science, biology, and chemistry, including six citation classics (papers with more than or equal to 100 citations). He founded and leads the Computational Biology group in the Department of Computer Science, University of Wales, Aberystwyth. In 2000 RDK co-founded the start-up company PharmaDM which carries out contract research for big Pharma, and markets drug-design software. Most recently, he has led the Robot Scientist project which demonstrated how biological experiments can be automated efficiently and in a closed-loop manner

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Speaker: Dr. Tom Oinn (European Bioinformatics Institute, UK)

Biodata

 

 

 

 

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"Classifying Proteins with myExperiment: myOntology"
Speaker: Dr. Robert Stevens (University of Manchester, UK)

Abstract
Our work on using an OWL ontology to classify members of the phosphatase protein family has given us the prospect of cataloging innumerable proteins from many families and suggesting many new types of proteins.  the barrier to really exploiting the potential is the development of the hundreds of protein family ontologies. In this talk I'll raise the question of the ontology counterpart of the myexperiment idea; that is, "myOntology". can we engage the cummunity in building such ontologies? the lure might be the discovery of novel proteins and the means to analyse them through the community effects, social organisation of myExperiment. Can we gather information from tags supplied during analyses on proteins to help develop protein family ontologies? Protein family analysis through OWL; the bioinformatics analysis of the results and the commmunity development of the ontologies offers an ideal marketplace for eScience and ontologies.

Biodata

Dr. Robert Stevens is a senior lecturer in Bioinformatics in the bioHealth Informatics Group (http://www.cs.manchester.ac.uk/bhig) with a background in both biochemistry and computer science. His D.Phil in human computer interaction led to work focusing on biologist users of computer technology. He lead the Life Science work on the TAMBIS and GONG (http://gong.manchester.ac.uk) projects, and has been instrumental in bridging between biologists and computer scientists in the myGrid project. He has an international reputation in ontology development and controlled annotation, including: early development on semantic similarity measures in bioinformatics; collaborations with the NERC environmental biology community; the BioPAX consortium; and members of the Gene Ontology Consortium; ontologies to map evolutionary relationships between species in ComparaGrid (http://www.comparagrid.org/); and the development of annotation interfaces for working biologists (GOAT - http://goat.man.ac.uk & myTea - http://mytea.org.uk/) and a Life Science Semantic-based browser in the EU funded Sealife project (http://www.biotec.tu-dresden.de/sealife/). Robert is a CI on the CO-ODE project (http://www.co-ode.org/) that co-develops the Protege OWL ontology development environment. He co-chairs the databases and ontologies track at ISMB 2007 and has co-chaired the annual bio-ontologies meeting at ISMB for eight years. He has presented many tutorials on ontology and workflow development.

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Speaker: Prof. David De Roure (University of Southampton, UK)

Biodata

Prof. David De Roure is Head of Grid and Pervasive Computing in the School of Electronics and Computer Science, University of Southampton, UK. He was a founding member of the School's Intelligence, Agents, Multimedia Group and his current research focus is the application of advanced knowledge technologies to pervasive computing and the Grid. He is involved in the UK e-Science programme as Principal Investigator of the Open Middleware Infrastructure Institute UK in Southampton and Co-Director of the Southampton Regional e-Science Centre. He is Director of EnviSense, the DTI funded Centre for Pervasive Computing in the Environment. Internationally he is a member of the Steering Group of the Global Grid Forum and he leads the Semantic Grid Research Group with Carole Goble and has a coordinating role in WUN Grid. He obtained his PhD in 1990 in the design of distributed programming languages and subsequently worked in the field of declarative systems and later in hypermedia. He is a World Wide Web Consortium Advisory Committee member and actively involved in the international World Wide Web conference series as well as ACM Hypertext. He sits on the JISC Committee for the Support of Research and is engaged in AHRC Arts and Humanities e-Science initiatives.

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"The Grid Service Market: Economics of the Next Generation Internet and Grid"
Speaker: Dr. Colin Richardson (Imperial College, UK)

Abstract
As Computational Grids mature and the next generation Internet begins to emerge as a space for useful services that offer exciting possibilities for users, the two are merging into a general platform for services powered by transparently accessible compute power. However, an economic model for this environment, and the technologies that support it, has always been missing. This presentation describes our work into the development of an economic model to support the next generation Internet and the multitude of services it will provide.

Biodata
Dr. Colin Richardson was educated in economics at Monash University, Queens' College, Cambridge and the University of Tasmania, following service in the Royal Australian Navy - including visits to Singapore while on Strategic Reserve duty. He has been Chief Economist, Department of Management and Budget in Melbourne and Economic Adviser, HM Treasury in Whitehall. A former State President of the Economic Society of Australia, he joined the Online Media Program of LaTrobe University, researching Internet infrastructure (Telstra) and eCommerce (Australian Taxation Office). From 2003 he was a Research Fellow of the University of Abertay Dundee and in 2006 became Internet Economist at the London eScience Centre, Imperial College. Dr. Richardson (60) is an Australian citizen and a British subject. His present research interests include dynamic computer simulation modelling of complex economic systems and the development of global Grid and Web services, focussing on business models, incentive structures, investment decisions, and efficient pricing.

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Session: Gelato Meeting

"Welcome & Sharing on Gelato Federation"
Speaker: Dr. Mark Smith (Gelato Federation, USA)

Abstract
Itanium is a very scalable platform as the IT industry moves to multi-core. Itanium is starting to be widely adopted in Enterprise environments and is well suited to handle Enterprise workloads. Itanium workload and performance data will be presented as well as details on why Itanium scales so well. A brief overview of the Gelato Federation, the Linux Itanium technical community, will be discussed. I will also provide details on specific Gelato projects that are advancing the Linux Itanium platform.

Biodata

Mark K. Smith is the Managing Director of the Gelato Federation. He works with Federation Members and Sponsors around the world, fostering collaborative relationships among Members, Sponsors, and the general community to advance the Linux Itanium platform. Mark leads a technical team at University of Illinois and dedicates time to educating the general community about the advantages of the platform. Prior to joining Gelato, he worked in the software industry for 10 years. Mark holds a Ph.D. in engineering from the University of Illinois.

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"Itanium and Grid Computing - A Vendor's Perspective"
Speaker: Jeff Adie (SGI Asia Pacific)

Abstract
Many people's conception of Grid computing is based on a cluster of 'cheap' PCs or the utilisation of spare cycles on people's desktops and subsequently feel there is no place for premium processors like the Itanium. While low-cost clusters are certainly valid aspects of the Grid, they by no means encompass the complete realm of Grid requirements. We need to distinguish between capacity computing and capability computing, understanding that there is a need for the 'heavy lifting' as well. This talk discusses the relevance of Itanium within the Grid from the vendor's perspective, covering such issues as 'why Itanium?', the pros and cons of IPF, and thoughts on the future.

Biodata

Jeff Adie has a very strong practical background in visual and high-performance computing with the ability to architect solutions for a broad mix of customers in the entertainment, simulation and HPC sectors. As both an artist and a technologist, Jeff has extensive experience and a considerable depth of knowledge in the areas of feature film, broadcast television, post-production, visualisation, simulation, performance tuning and software design/development. Jeff's wide range of creative and technical skills enable him to help clients select the appropriate mix of SGI and third-party technologies to solve problems, or to build entire solutions.

Jeff's current interests include research into real time simulation and rendering of large, complex scenes. Jeff provides technical advice to production houses and consults on many projects, including a recent stint as a contract VFX supervisor for an Australian production. As a principal engineer, Jeff is also involved with current and future products that SGI is developing. Before joining SGI, Jeff worked as a senior VFX artist with Gibson Group Ltd.; as a consultant with Eagle Technology Ltd.; as a graphic artist for Video Images Ltd., and as a designer for ComputerVision Corp. He also founded and managed a successful private design company, Dataworks Design Limited, providing creative and consultative services to many design and production houses. Jeff also worked with Weta Digital in New Zealand providing services for the Lord of the Rings trilogy of feature films. Jeff has a postgraduate Diploma of Computer Science in Computer Graphics and Parallel Architecture from the University of Auckland, New Zealand

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"Preparing for LHC Turn-on--ALICE in Grid-land"
Speaker: Prof. Lawrence Pinsky (University of Houston, USA)

Abstract
One of the major drivers of Grid middleware development over the most recent years has been the preparation for the data taking and subsequent analysis by the CERN LHC experiments. Along with the other major LHC experiments, ALICE has been progressing through a series of data challenges to assess and improve the Grid services that will be needed when the full bore data analysis load will arrive over the next few years. ALICE has a data volume problem that makes the Grid essential, and also more-so than any of the other LHC experiments, ALICE has to make use of diverse systems with diverse architectures to obtain access to sufficient computing resources. Among other achievements, ALICE has successfully incorporated using Grid-based computing resources based on Itanium clusters (such as are available in Singapore) using their AliEn middleware. The current state of affairs with respect to the ALICE-specific middleware tools and the relative performance of the Itaniums will be presented.

Biodata

Professor Lawrence Pinsky is the chairperson of the Physics Department at the University of Houston.  He holds a B.S. in physics from Carnegie-Mellon University and an M.A. and Ph.D. in physics from the University of Rochester.  Professor Pinsky also holds J.D. and LL.M. degrees from the University of Houston's Law Center.  He is licensed to practice law in the State of Texas, specializing in intellectual property and information law, as well as being a licensed patent attorney. Professor Pinsky is a member of the ALICE-USA Collaboration and has served as the Computing Coordinator for that effort.  He is a member of the ALICE Computing Board and the CERN Grid Deployment Board.  At the University of Houston he is a member of the Executive Committee of the Texas Learning and Computation Center.  Professor Pinsky also has an extensive NASA-supported research effort in the development of Monte Carlo Transport codes for use in simulating the space radiation environment.

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"Infomediation and Markets in Transition"
Speaker: Kumaran Pillai (Protege Software Pte Ltd)

Abstract
The impact of Itanium technology has enabled businesses to adopt new innovative business models. Improvements in process efficiencies have enabled business to explore and exploit info-mediation not as just alternate but as primary business models driving their business in the 21st century. The quantum leap in computational power has led to the commoditization of specialist services in many industries. The executive briefing narrates how technology plays a part in achieving top line growth and profitability and how you can achieve business agility by adopting the latest Itanium innovation. Learn how to develop your own technology roadmap and learn how to develop a strategy for success.

Biodata

Kumaran is a serial entrepreneur who brings the breadth and depth of executive experience into the company. Prior to the founding of Protege, Kumaran was the CEO of Zenith Software Technology which qualified for the Technology Incubation Program in May 2000, under the auspices of A*Star (formerly known as the National Science and Technology Board) in Singapore. His current responsibilities include strategy formulation, financial management, business development, product development and marketing. Kumaran graduated with a Bachelors of Information Technology from the University of Queensland, Australia, was a recipient of the Letter of Outstanding Performance. His hobbies include writing, listening to music, reading about history and doing social work. He is blessed with a wife and two children.

 

 


Organized byAgency for Science, Technology and Research Infocomm Development Authority of SingaporeNational Grid Nanyang Technological University National University of SingaporeSingapore Grid ForumSingapore Management University
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